|
| Status |
Public on Jan 01, 2017 |
| Title |
619 |
| Sample type |
SRA |
| |
|
| Source name |
foreskin fibroblasts HNF
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: fibroblast
replicate: 1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol
TruSeq RNA Sample Preparation Kit v2
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 1500 |
| |
|
| Description |
human foreskin fibroblasts, replicate 1
|
| Data processing |
HiSeq 1500 (Illumina), >Q30
casava v1.8.4, default
TopHat2 v2.0.13, default
DESeq
PGS v6.6 floored: min value=1, filtered: ignore values <10 in all cell types
Genome_build: hg19
Supplementary_files_format_and_content: csv; flored and filtered DESeq expression values
|
| |
|
| Submission date |
Jan 12, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Joachim Schultze |
| E-mail(s) |
j.schultze@uni-bonn.de
|
| Organization name |
LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
|
| Department |
Genomics and Immunoregulation
|
| Street address |
Carl-Troll-Strasse 31
|
| City |
Bonn |
| State/province |
NRW |
| ZIP/Postal code |
53115 |
| Country |
Germany |
| |
|
| Platform ID |
GPL18460 |
| Series (1) |
| GSE64882 |
Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor |
|
| Relations |
| BioSample |
SAMN03281229 |
| SRA |
SRX838338 |
