|
| Status |
Public on Jun 03, 2015 |
| Title |
Hippocampus of subject 178 (Sample53) |
| Sample type |
genomic |
| |
|
| Source name |
Brain Hippocampus
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Brain Hippocampus
subject id: 178
Sex: M
predicted gender: male
age: 93
dna methylation age: 73.464390394485
age acceleration with respect to noncerebellar samples: 1.94652926509617
cor sample vs gold standard: 0.893515724054739
mean abs difference sample vs gold standard: 0.0834109408483152
postmortem interval: 22
|
| Growth protocol |
DNA extracted from fresh frozen tissue
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from fresh frozen tissue using the AllPrep DNA/RNA mini kit according to standard instructions.
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values included in Series supplementary file
|
| |
|
| Submission date |
Dec 24, 2014 |
| Last update date |
Jun 03, 2015 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE64509 |
DNA methylation profiles of human brain tissue samples |
| GSE64511 |
DNA methylation profiles of multiple human tissues |
|
