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| Status |
Public on Jul 09, 2015 |
| Title |
04H030 |
| Sample type |
SRA |
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| Source name |
acute myeloid leukemia
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| Organism |
Homo sapiens |
| Characteristics |
tissue: Bone marrow
cell type: acute myeloid leukemia
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| Extracted molecule |
total RNA |
| Extraction protocol |
TriZol + RNeasy mini Kit (Qiagen, #74106)
TruSeq RNA Sample Preparation (Illumina)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
Basecalls performed using CASAVA 1.8.2
Sequenced reads were mapped to the reference genome using CASAVA 1.8.2
Reads Per Kilobase of exon per Megabase of library size (RPKM) were calculated using CASAVA 1.8.2 on RefSeq annotation, dated 2014-04-16.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text files include RPKM values for each sample. Columns are: Chromosome, Start location, Stop location, Gene, RPKM, base count.
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| Submission date |
Oct 08, 2014 |
| Last update date |
May 10, 2023 |
| Contact name |
Guy Sauvageau |
| Organization name |
Institute for Research in Immunology and Cancer
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| Street address |
2950, Chemin de Polytechnique
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| City |
Montreal |
| State/province |
QC |
| ZIP/Postal code |
H3T 1J4 |
| Country |
Canada |
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| Platform ID |
GPL11154 |
| Series (2) |
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| Relations |
| Reanalyzed by |
GSE122515 |
| BioSample |
SAMN03100275 |
| SRA |
SRX729603 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1521594_04H030_RPKM.txt.gz |
479.2 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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