|
| Status |
Public on Nov 03, 2014 |
| Title |
Human liver expression data from subject S11a154c2 |
| Sample type |
RNA |
| |
|
| Source name |
liver tissue
|
| Organism |
Homo sapiens |
| Characteristics |
subjectid: S11a154c2
Sex: female
age: 32
bmi: 47.3
diseasestatus: NASH
|
| Treatment protocol |
not applicable
|
| Growth protocol |
liver biopsy
|
| Extracted molecule |
total RNA |
| Extraction protocol |
For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
|
| Label |
biotin
|
| Label protocol |
labelled by biotin according to the manufacturers protocols
|
| |
|
| Hybridization protocol |
according to the manufacturers protocols
|
| Scan protocol |
according to the manufacturers protocols
|
| Description |
Gene expression data from human liver tissue
|
| Data processing |
RMA normalization with Bioconductor package oligo
Reported values are log2 RMA normalized gene level expression values from Bioconductor package oligo
|
| |
|
| Submission date |
Sep 09, 2014 |
| Last update date |
Nov 04, 2014 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL11532 |
| Series (2) |
| GSE61256 |
Obesity accelerates epigenetic aging of human liver |
| GSE61260 |
Human liver gene expression data from subjects of varying ages |
|
