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GEO accession:
Sample GSM146373
Query DataSets for GSM146373
Status
Public on Mar 31, 2007
Title
Golden Promise shoot Salt, biological rep 2
Sample type
RNA
Source name
Golden Promise shoot
Organism
Hordeum vulgare
Characteristics
Genotype: Golden Promise
Treatment protocol
salt shoot
Growth protocol
hydroponics
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol
GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description
Gene expression data from barley shoot
Data processing
The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date
Nov 20, 2006
Last update date
Mar 31, 2007
Contact name
Harkamal Walia
Organization name
University of Nebraska
Street address
Agronomy and Horticulture
City
Lincoln
State/province
NE
ZIP/Postal code
68583
Country
USA
Platform ID
GPL1340
Series (1)
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
205.5
P
0.006187
AFFX-BioB-M_at
99.5
P
0.001102
AFFX-BioB-3_at
101.5
P
0.001796
AFFX-BioC-5_at
383.9
P
0.000127
AFFX-BioC-3_at
441.4
P
0.000044
AFFX-BioDn-5_at
494.2
P
0.000044
AFFX-BioDn-3_at
1891
P
0.000127
AFFX-CreX-5_at
3225.9
P
0.000044
AFFX-CreX-3_at
5654.7
P
0.000044
AFFX-DapX-5_at
275.4
P
0.00006
AFFX-DapX-M_at
752
P
0.000297
AFFX-DapX-3_at
1629.8
P
0.000044
AFFX-LysX-5_at
48.2
P
0.000972
AFFX-LysX-M_at
162
P
0.013811
AFFX-LysX-3_at
301.7
P
0.000044
AFFX-PheX-5_at
86.5
P
0.001102
AFFX-PheX-M_at
102.7
P
0.004017
AFFX-PheX-3_at
150.8
P
0.000052
AFFX-ThrX-5_at
110
P
0.005565
AFFX-ThrX-M_at
195.3
P
0.000169
Total number of rows:
22840
Table truncated, full table size
703 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM146373.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
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