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Sample GSM146373 Query DataSets for GSM146373
Status Public on Mar 31, 2007
Title Golden Promise shoot Salt, biological rep 2
Sample type RNA
Source name Golden Promise shoot
Organism Hordeum vulgare
Characteristics Genotype: Golden Promise

Treatment protocol salt shoot
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley shoot
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 205.5 P 0.006187
AFFX-BioB-M_at 99.5 P 0.001102
AFFX-BioB-3_at 101.5 P 0.001796
AFFX-BioC-5_at 383.9 P 0.000127
AFFX-BioC-3_at 441.4 P 0.000044
AFFX-BioDn-5_at 494.2 P 0.000044
AFFX-BioDn-3_at 1891 P 0.000127
AFFX-CreX-5_at 3225.9 P 0.000044
AFFX-CreX-3_at 5654.7 P 0.000044
AFFX-DapX-5_at 275.4 P 0.00006
AFFX-DapX-M_at 752 P 0.000297
AFFX-DapX-3_at 1629.8 P 0.000044
AFFX-LysX-5_at 48.2 P 0.000972
AFFX-LysX-M_at 162 P 0.013811
AFFX-LysX-3_at 301.7 P 0.000044
AFFX-PheX-5_at 86.5 P 0.001102
AFFX-PheX-M_at 102.7 P 0.004017
AFFX-PheX-3_at 150.8 P 0.000052
AFFX-ThrX-5_at 110 P 0.005565
AFFX-ThrX-M_at 195.3 P 0.000169

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.

Supplementary file Size Download File type/resource
GSM146373.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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