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Sample GSM146372 Query DataSets for GSM146372
Status Public on Mar 31, 2007
Title Golden Promise shoot Salt, biological rep 1
Sample type RNA
 
Source name Golden Promise shoot
Organism Hordeum vulgare
Characteristics Genotype: Golden Promise

Treatment protocol salt shoot
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley shoot
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
 
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 149.6 P 0.011384
AFFX-BioB-M_at 81.3 P 0.000662
AFFX-BioB-3_at 69.7 P 0.003595
AFFX-BioC-5_at 281.2 P 0.000169
AFFX-BioC-3_at 338.1 P 0.000052
AFFX-BioDn-5_at 459.8 P 0.000044
AFFX-BioDn-3_at 1579.2 P 0.000147
AFFX-CreX-5_at 2506.5 P 0.000044
AFFX-CreX-3_at 5270.3 P 0.000044
AFFX-DapX-5_at 191.2 P 0.000081
AFFX-DapX-M_at 670 P 0.000195
AFFX-DapX-3_at 1342.3 P 0.000044
AFFX-LysX-5_at 46.8 P 0.000225
AFFX-LysX-M_at 102.6 P 0.020022
AFFX-LysX-3_at 228.6 P 0.000225
AFFX-PheX-5_at 89.9 P 0.000127
AFFX-PheX-M_at 81.7 P 0.009337
AFFX-PheX-3_at 151.3 P 0.00006
AFFX-ThrX-5_at 93.7 P 0.003212
AFFX-ThrX-M_at 175.2 P 0.000195

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.




Supplementary file Size Download File type/resource
GSM146372.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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