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Sample GSM146370 Query DataSets for GSM146370
Status Public on Mar 31, 2007
Title Golden Promise shoot Control, biological rep 2
Sample type RNA
 
Source name Golden Promise shoot
Organism Hordeum vulgare
Characteristics Genotype: Golden Promise

Treatment protocol control shoot
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley shoot
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
 
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 204.2 P 0.002023
AFFX-BioB-M_at 103.3 P 0.000258
AFFX-BioB-3_at 116 P 0.000258
AFFX-BioC-5_at 429.7 P 0.00006
AFFX-BioC-3_at 518.6 P 0.000044
AFFX-BioDn-5_at 701.7 P 0.000044
AFFX-BioDn-3_at 2130.2 P 0.000081
AFFX-CreX-5_at 3886.7 P 0.000044
AFFX-CreX-3_at 8071 P 0.000044
AFFX-DapX-5_at 200.7 P 0.000081
AFFX-DapX-M_at 622.6 P 0.000225
AFFX-DapX-3_at 1209.9 P 0.000044
AFFX-LysX-5_at 42.1 P 0.000081
AFFX-LysX-M_at 79.9 P 0.015183
AFFX-LysX-3_at 202.4 P 0.00007
AFFX-PheX-5_at 75.9 P 0.000446
AFFX-PheX-M_at 87.6 P 0.004017
AFFX-PheX-3_at 117.2 P 0.000095
AFFX-ThrX-5_at 85.5 P 0.002556
AFFX-ThrX-M_at 162.4 P 0.000095

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.




Supplementary file Size Download File type/resource
GSM146370.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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