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Sample GSM146369 Query DataSets for GSM146369
Status Public on Mar 31, 2007
Title Golden Promise shoot Control, biological rep1
Sample type RNA
 
Source name Golden Promise shoot
Organism Hordeum vulgare
Characteristics Genotype: Golden Promise

Treatment protocol control shoot
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley shoot
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
 
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 114.5 P 0.003595
AFFX-BioB-M_at 81 P 0.00034
AFFX-BioB-3_at 86.7 P 0.000972
AFFX-BioC-5_at 252.9 P 0.000095
AFFX-BioC-3_at 341.8 P 0.000052
AFFX-BioDn-5_at 510.7 P 0.00007
AFFX-BioDn-3_at 1393.4 P 0.000169
AFFX-CreX-5_at 2261.9 P 0.000044
AFFX-CreX-3_at 4519.9 P 0.000044
AFFX-DapX-5_at 190 P 0.000147
AFFX-DapX-M_at 467.1 P 0.000446
AFFX-DapX-3_at 1031 P 0.000052
AFFX-LysX-5_at 50.2 P 0.000225
AFFX-LysX-M_at 77.7 P 0.042962
AFFX-LysX-3_at 175 P 0.000127
AFFX-PheX-5_at 84.7 P 0.000509
AFFX-PheX-M_at 73 P 0.006871
AFFX-PheX-3_at 136.9 P 0.000127
AFFX-ThrX-5_at 82.7 P 0.00141
AFFX-ThrX-M_at 126.5 P 0.000258

Total number of rows: 22840

Table truncated, full table size 702 Kbytes.




Supplementary file Size Download File type/resource
GSM146369.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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