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Sample GSM146368 Query DataSets for GSM146368
Status Public on Mar 31, 2007
Title Maythorpe Root Salt, biological rep 3
Sample type RNA
Source name Maythorpe Root
Organism Hordeum vulgare
Characteristics Genotype: Maythorpe

Treatment protocol salt root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 118.5 P 0.015183
AFFX-BioB-M_at 75.5 P 0.00034
AFFX-BioB-3_at 108.9 P 0.00141
AFFX-BioC-5_at 328.9 P 0.00006
AFFX-BioC-3_at 362.5 P 0.000052
AFFX-BioDn-5_at 609.7 P 0.000044
AFFX-BioDn-3_at 1703.6 P 0.000147
AFFX-CreX-5_at 3316.2 P 0.000044
AFFX-CreX-3_at 5620.6 P 0.000044
AFFX-DapX-5_at 225.6 P 0.000044
AFFX-DapX-M_at 519.4 P 0.00039
AFFX-DapX-3_at 1257.9 P 0.000044
AFFX-LysX-5_at 43.8 P 0.002556
AFFX-LysX-M_at 109.2 P 0.026111
AFFX-LysX-3_at 229.1 P 0.000147
AFFX-PheX-5_at 77.6 P 0.000258
AFFX-PheX-M_at 65.7 P 0.009337
AFFX-PheX-3_at 98.5 P 0.000754
AFFX-ThrX-5_at 70.8 P 0.000258
AFFX-ThrX-M_at 149.7 P 0.000581

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.

Supplementary file Size Download File type/resource
GSM146368.CEL.gz 3.4 Mb (ftp)(http) CEL

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