GEO Publications
Handout
NAR 2013 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM146368
Query DataSets for GSM146368
Status
Public on Mar 31, 2007
Title
Maythorpe Root Salt, biological rep 3
Sample type
RNA
Source name
Maythorpe Root
Organism
Hordeum vulgare
Characteristics
Genotype: Maythorpe
Treatment protocol
salt root
Growth protocol
hydroponics
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol
GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description
Gene expression data from barley root
Data processing
The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date
Nov 20, 2006
Last update date
Mar 31, 2007
Contact name
Harkamal Walia
Organization name
University of Nebraska
Street address
Agronomy and Horticulture
City
Lincoln
State/province
NE
ZIP/Postal code
68583
Country
USA
Platform ID
GPL1340
Series (1)
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
118.5
P
0.015183
AFFX-BioB-M_at
75.5
P
0.00034
AFFX-BioB-3_at
108.9
P
0.00141
AFFX-BioC-5_at
328.9
P
0.00006
AFFX-BioC-3_at
362.5
P
0.000052
AFFX-BioDn-5_at
609.7
P
0.000044
AFFX-BioDn-3_at
1703.6
P
0.000147
AFFX-CreX-5_at
3316.2
P
0.000044
AFFX-CreX-3_at
5620.6
P
0.000044
AFFX-DapX-5_at
225.6
P
0.000044
AFFX-DapX-M_at
519.4
P
0.00039
AFFX-DapX-3_at
1257.9
P
0.000044
AFFX-LysX-5_at
43.8
P
0.002556
AFFX-LysX-M_at
109.2
P
0.026111
AFFX-LysX-3_at
229.1
P
0.000147
AFFX-PheX-5_at
77.6
P
0.000258
AFFX-PheX-M_at
65.7
P
0.009337
AFFX-PheX-3_at
98.5
P
0.000754
AFFX-ThrX-5_at
70.8
P
0.000258
AFFX-ThrX-M_at
149.7
P
0.000581
Total number of rows:
22840
Table truncated, full table size
703 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM146368.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
