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Sample GSM146367 Query DataSets for GSM146367
Status Public on Mar 31, 2007
Title Maythorpe Root Salt, biological rep 2
Sample type RNA
 
Source name Maythorpe Root
Organism Hordeum vulgare
Characteristics Genotype: Maythorpe

Treatment protocol salt root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
 
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 99.3 P 0.020022
AFFX-BioB-M_at 75.9 P 0.003212
AFFX-BioB-3_at 102.2 P 0.000446
AFFX-BioC-5_at 274.5 P 0.000169
AFFX-BioC-3_at 390.5 P 0.00006
AFFX-BioDn-5_at 544.5 P 0.000052
AFFX-BioDn-3_at 1396.5 P 0.000147
AFFX-CreX-5_at 2590.3 P 0.000044
AFFX-CreX-3_at 6469.8 P 0.000044
AFFX-DapX-5_at 263 P 0.00007
AFFX-DapX-M_at 653.6 P 0.000258
AFFX-DapX-3_at 1608.9 P 0.000044
AFFX-LysX-5_at 48.6 P 0.000258
AFFX-LysX-M_at 129.7 P 0.036569
AFFX-LysX-3_at 149.7 P 0.000127
AFFX-PheX-5_at 96 P 0.000147
AFFX-PheX-M_at 94.9 P 0.000754
AFFX-PheX-3_at 168.7 P 0.000258
AFFX-ThrX-5_at 130.7 P 0.00141
AFFX-ThrX-M_at 218.4 P 0.00011

Total number of rows: 22840

Table truncated, full table size 702 Kbytes.




Supplementary file Size Download File type/resource
GSM146367.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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