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Sample GSM146366 Query DataSets for GSM146366
Status Public on Mar 31, 2007
Title Maythorpe Root Salt, biological rep 1
Sample type RNA
 
Source name Maythorpe Root
Organism Hordeum vulgare
Characteristics Genotype: Maythorpe

Treatment protocol salt root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
 
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 254 P 0.00039
AFFX-BioB-M_at 137 P 0.000195
AFFX-BioB-3_at 133.1 P 0.000127
AFFX-BioC-5_at 440.8 P 0.00011
AFFX-BioC-3_at 342 P 0.000052
AFFX-BioDn-5_at 524.6 P 0.000044
AFFX-BioDn-3_at 2470.2 P 0.00006
AFFX-CreX-5_at 4433.4 P 0.000044
AFFX-CreX-3_at 7483.8 P 0.000052
AFFX-DapX-5_at 570.2 P 0.00007
AFFX-DapX-M_at 1246.7 P 0.000095
AFFX-DapX-3_at 2423.3 P 0.000044
AFFX-LysX-5_at 83.7 P 0.00007
AFFX-LysX-M_at 126.8 P 0.001796
AFFX-LysX-3_at 350 P 0.000044
AFFX-PheX-5_at 171.2 P 0.00007
AFFX-PheX-M_at 225.8 P 0.000195
AFFX-PheX-3_at 298.8 P 0.000081
AFFX-ThrX-5_at 169.6 P 0.000081
AFFX-ThrX-M_at 318 P 0.000044

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.




Supplementary file Size Download File type/resource
GSM146366.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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