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Sample GSM146364 Query DataSets for GSM146364
Status Public on Mar 31, 2007
Title Maythorpe Root Control, biological rep 2
Sample type RNA
Source name Maythorpe Root
Organism Hordeum vulgare
Characteristics Genotype: Maythorpe

Treatment protocol control root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 123.7 P 0.005565
AFFX-BioB-M_at 56 P 0.001593
AFFX-BioB-3_at 75.3 P 0.000509
AFFX-BioC-5_at 272.1 P 0.00006
AFFX-BioC-3_at 295.3 P 0.000044
AFFX-BioDn-5_at 544.7 P 0.000044
AFFX-BioDn-3_at 1480.2 P 0.00011
AFFX-CreX-5_at 2462.9 P 0.000044
AFFX-CreX-3_at 5503.1 P 0.000044
AFFX-DapX-5_at 348.7 P 0.00006
AFFX-DapX-M_at 862.8 P 0.000081
AFFX-DapX-3_at 2039.1 P 0.000044
AFFX-LysX-5_at 67.5 P 0.00006
AFFX-LysX-M_at 126 P 0.00844
AFFX-LysX-3_at 270.7 P 0.00007
AFFX-PheX-5_at 138.6 P 0.000095
AFFX-PheX-M_at 127 P 0.000095
AFFX-PheX-3_at 218.2 P 0.00007
AFFX-ThrX-5_at 162 P 0.000081
AFFX-ThrX-M_at 234.2 P 0.00006

Total number of rows: 22840

Table truncated, full table size 702 Kbytes.

Supplementary file Size Download File type/resource
GSM146364.CEL.gz 3.4 Mb (ftp)(http) CEL

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