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Sample GSM146363 Query DataSets for GSM146363
Status Public on Mar 31, 2007
Title Maythorpe Root Control, biological rep1
Sample type RNA
 
Source name Maythorpe Root
Organism Hordeum vulgare
Characteristics Genotype: Maythorpe

Treatment protocol control root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
 
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 248.1 P 0.000662
AFFX-BioB-M_at 142.8 P 0.000224
AFFX-BioB-3_at 178.6 P 0.00034
AFFX-BioC-5_at 352 P 0.000146
AFFX-BioC-3_at 379.2 P 0.000044
AFFX-BioDn-5_at 433.7 P 0.000044
AFFX-BioDn-3_at 2496.9 P 0.00006
AFFX-CreX-5_at 4597.8 P 0.000044
AFFX-CreX-3_at 8388.2 P 0.000044
AFFX-DapX-5_at 585.3 P 0.00006
AFFX-DapX-M_at 1310.4 P 0.000081
AFFX-DapX-3_at 2101.6 P 0.000044
AFFX-LysX-5_at 91.8 P 0.000044
AFFX-LysX-M_at 167.1 P 0.003595
AFFX-LysX-3_at 388.8 P 0.00007
AFFX-PheX-5_at 167.8 P 0.000081
AFFX-PheX-M_at 198.1 P 0.000169
AFFX-PheX-3_at 267.2 P 0.00007
AFFX-ThrX-5_at 144.2 P 0.000081
AFFX-ThrX-M_at 296 P 0.000044

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.




Supplementary file Size Download File type/resource
GSM146363.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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