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Sample GSM146362 Query DataSets for GSM146362
Status Public on Mar 31, 2007
Title Golden Promise Root Salt, biological rep 3
Sample type RNA
 
Source name Golden Promise Root
Organism Hordeum vulgare
Characteristics Genotype: Golden Promise

Treatment protocol salt root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
 
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
ID_REF
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 150.3 P 0.00762
AFFX-BioB-M_at 92.1 P 0.001102
AFFX-BioB-3_at 102 P 0.001102
AFFX-BioC-5_at 413.6 P 0.00006
AFFX-BioC-3_at 430.9 P 0.000044
AFFX-BioDn-5_at 735.2 P 0.000044
AFFX-BioDn-3_at 2109.5 P 0.000147
AFFX-CreX-5_at 3950.2 P 0.000044
AFFX-CreX-3_at 6863.1 P 0.000044
AFFX-DapX-5_at 257.7 P 0.00007
AFFX-DapX-M_at 638.7 P 0.000195
AFFX-DapX-3_at 1444.2 P 0.000044
AFFX-LysX-5_at 59.7 P 0.000972
AFFX-LysX-M_at 118.3 P 0.030976
AFFX-LysX-3_at 283.1 P 0.000044
AFFX-PheX-5_at 91.6 P 0.000297
AFFX-PheX-M_at 94.2 P 0.002275
AFFX-PheX-3_at 152.8 P 0.000258
AFFX-ThrX-5_at 86.7 P 0.002556
AFFX-ThrX-M_at 155.9 P 0.000095

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.




Supplementary file Size Download File type/resource
GSM146362.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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