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Sample GSM146360 Query DataSets for GSM146360
Status Public on Mar 31, 2007
Title Golden Promise Root Salt, biological rep 1
Sample type RNA
Source name Golden Promise Root
Organism Hordeum vulgare
Characteristics Genotype: Golden Promise

Treatment protocol salt root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 208.8 P 0.001248
AFFX-BioB-M_at 98.4 P 0.000081
AFFX-BioB-3_at 147.3 P 0.000127
AFFX-BioC-5_at 390.4 P 0.000169
AFFX-BioC-3_at 348.2 P 0.00006
AFFX-BioDn-5_at 378.6 P 0.000052
AFFX-BioDn-3_at 2361.6 P 0.00006
AFFX-CreX-5_at 4245.7 P 0.000044
AFFX-CreX-3_at 9591.5 P 0.000044
AFFX-DapX-5_at 659.3 P 0.000044
AFFX-DapX-M_at 1408 P 0.00006
AFFX-DapX-3_at 2641.2 P 0.000044
AFFX-LysX-5_at 85.1 P 0.000052
AFFX-LysX-M_at 187 P 0.004017
AFFX-LysX-3_at 419.1 P 0.000052
AFFX-PheX-5_at 214.5 P 0.00006
AFFX-PheX-M_at 180.8 P 0.000044
AFFX-PheX-3_at 310.7 P 0.000052
AFFX-ThrX-5_at 224.3 P 0.00007
AFFX-ThrX-M_at 389.1 P 0.000044

Total number of rows: 22840

Table truncated, full table size 702 Kbytes.

Supplementary file Size Download File type/resource
GSM146360.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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