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GEO accession:
Sample GSM146359
Query DataSets for GSM146359
Status
Public on Mar 31, 2007
Title
Golden Promise Root Control, biological rep 3
Sample type
RNA
Source name
Golden Promise Root
Organism
Hordeum vulgare
Characteristics
Genotype: Golden Promise
Treatment protocol
control root
Growth protocol
hydroponics
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol
GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description
Gene expression data from barley root
Data processing
The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date
Nov 20, 2006
Last update date
Mar 31, 2007
Contact name
Harkamal Walia
Organization name
University of Nebraska
Street address
Agronomy and Horticulture
City
Lincoln
State/province
NE
ZIP/Postal code
68583
Country
USA
Platform ID
GPL1340
Series (1)
GSE6325
Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
Data table header descriptions
ID_REF
VALUE
GCOS-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
181.4
P
0.005565
AFFX-BioB-M_at
92.7
P
0.000195
AFFX-BioB-3_at
87.2
P
0.000581
AFFX-BioC-5_at
392.3
P
0.000081
AFFX-BioC-3_at
419
P
0.000052
AFFX-BioDn-5_at
656.3
P
0.000044
AFFX-BioDn-3_at
1908.6
P
0.000147
AFFX-CreX-5_at
3306.5
P
0.000044
AFFX-CreX-3_at
5578.2
P
0.000052
AFFX-DapX-5_at
337
P
0.00006
AFFX-DapX-M_at
789.7
P
0.000147
AFFX-DapX-3_at
1706.9
P
0.000044
AFFX-LysX-5_at
48.1
P
0.000127
AFFX-LysX-M_at
135.7
P
0.030976
AFFX-LysX-3_at
216.1
P
0.000095
AFFX-PheX-5_at
98.7
P
0.000195
AFFX-PheX-M_at
106.5
P
0.000581
AFFX-PheX-3_at
144
P
0.000147
AFFX-ThrX-5_at
118.2
P
0.000195
AFFX-ThrX-M_at
244.2
P
0.00006
Total number of rows:
22840
Table truncated, full table size
703 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM146359.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
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