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Sample GSM146357 Query DataSets for GSM146357
Status Public on Mar 31, 2007
Title Golden Promise Root Control, biological rep1
Sample type RNA
Source name Golden Promise Root
Organism Hordeum vulgare
Characteristics Genotype: Golden Promise

Treatment protocol control root
Growth protocol hydroponics
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner
Description Gene expression data from barley root
Data processing The data were analyzed with GCOS using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Nov 20, 2006
Last update date Mar 31, 2007
Contact name Harkamal Walia
Organization name University of Nebraska
Street address Agronomy and Horticulture
City Lincoln
State/province NE
ZIP/Postal code 68583
Country USA
Platform ID GPL1340
Series (1)
GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Data table header descriptions
VALUE GCOS-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 192.8 P 0.000662
AFFX-BioB-M_at 131.1 P 0.000147
AFFX-BioB-3_at 196.2 P 0.000581
AFFX-BioC-5_at 317.6 P 0.00011
AFFX-BioC-3_at 349 P 0.000044
AFFX-BioDn-5_at 403.5 P 0.000044
AFFX-BioDn-3_at 2177.2 P 0.00006
AFFX-CreX-5_at 4157.5 P 0.000044
AFFX-CreX-3_at 7755.8 P 0.000044
AFFX-DapX-5_at 589.5 P 0.000052
AFFX-DapX-M_at 1230.8 P 0.000081
AFFX-DapX-3_at 2175 P 0.000044
AFFX-LysX-5_at 93.2 P 0.000052
AFFX-LysX-M_at 176 P 0.002275
AFFX-LysX-3_at 346.5 P 0.00011
AFFX-PheX-5_at 174 P 0.000052
AFFX-PheX-M_at 164.1 P 0.000169
AFFX-PheX-3_at 247.5 P 0.00006
AFFX-ThrX-5_at 202.6 P 0.000095
AFFX-ThrX-M_at 310.1 P 0.000044

Total number of rows: 22840

Table truncated, full table size 703 Kbytes.

Supplementary file Size Download File type/resource
GSM146357.CEL.gz 3.3 Mb (ftp)(http) CEL

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