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Sample GSM139769 Query DataSets for GSM139769
Status Public on Oct 21, 2006
Title NRMRL test replicate05, EPA63 batch032405
Sample type RNA
 
Source name murine small intestinal cell culture
Organism Mus musculus
Characteristics MICcl2 cell line
Extracted molecule total RNA
Extraction protocol TriZol procedure
Label Streptavidin Phycoerythrin (SAPE)
Label protocol Affymetrix SOP, EukGE-WS2
 
Hybridization protocol MAS 5.0 software EukGE-WS1
Scan protocol MAS 5.0 with model 4500 scanner
Description None
Data processing GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065; Tau 0.015; Gamma1L and 1H 0.0045; Gamma 2L and 2H 0.06; and Pertubation 1.1.
 
Submission date Oct 12, 2006
Last update date Aug 28, 2018
Contact name Samuel Hayes
E-mail(s) hayes.sam@epa.gov
Phone 513-569-7514
Organization name United States Environmental Protection Agency
Department MS-387
Lab NRMRL/WSWRD
Street address 26 W. Martin Luther King Dr.
City Cincinnati
State/province OH
ZIP/Postal code 45268
Country USA
 
Platform ID GPL1261
Series (1)
GSE6065 Murine host cell response to Aeromonas infection
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
EPA05020_60764_M430-2_CEPA6307_Stat Pairs total probe sets
EPA05020_60764_M430-2_CEPA6307_Stat Pairs Used probe sets used
VALUE normalized intensity value
ABS_CALL present, absent marginal call
DETECTION P-VALUE Detection p-value

Data table
ID_REF EPA05020_60764_M430-2_CEPA6307_Stat Pairs EPA05020_60764_M430-2_CEPA6307_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 310.4 P 0.001102
AFFX-BioB-M_at 20 20 511.0 P 0.000081
AFFX-BioB-3_at 20 20 313.3 P 0.000581
AFFX-BioC-5_at 20 20 1129.5 P 0.000052
AFFX-BioC-3_at 20 20 1556.8 P 0.000052
AFFX-BioDn-5_at 20 20 1707.4 P 0.000044
AFFX-BioDn-3_at 20 20 6537.4 P 0.000110
AFFX-CreX-5_at 20 20 11520.1 P 0.000052
AFFX-CreX-3_at 20 20 14886.2 P 0.000044
AFFX-DapX-5_at 20 20 11.3 A 0.455413
AFFX-DapX-M_at 20 20 25.0 A 0.514890
AFFX-DapX-3_at 20 20 14.7 A 0.891021
AFFX-LysX-5_at 20 20 25.2 A 0.514890
AFFX-LysX-M_at 20 20 7.4 A 0.927300
AFFX-LysX-3_at 20 20 26.0 A 0.078002
AFFX-PheX-5_at 20 20 2.7 A 0.953519
AFFX-PheX-M_at 20 20 3.7 A 0.824672
AFFX-PheX-3_at 20 20 16.9 A 0.617401
AFFX-ThrX-5_at 20 20 8.1 A 0.794268
AFFX-ThrX-M_at 20 20 6.9 A 0.659339

Total number of rows: 45101

Table truncated, full table size 1495 Kbytes.




Supplementary file Size Download File type/resource
GSM139769.CEL.gz 6.1 Mb (ftp)(http) CEL

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