NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM136936 Query DataSets for GSM136936
Status Public on Mar 18, 2007
Title Poplar in 1 x hrp + 0.25 % sucrose no bacteria
Sample type RNA
 
Source name Channel1
Organism Populus
Characteristics RNA extracted from poplar roots after 12 hours in 1 x hrp + 0.25 % sucrose
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Plant Mini Kit Protocol
Label biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description RNA extracted from poplar roots after 12 hours in 1 x hrp + 0.25 % sucrose
Data processing MAS 5.0 Expression Analysis Default Setting
 
Submission date Sep 20, 2006
Last update date Mar 18, 2007
Contact name Can Attila
E-mail(s) can.attila@chemail.tamu.edu
Organization name Texas A&M University
Department Chemical Eng
Street address 524 Jack E. Brown Bldg.
City College Station
State/province TX
ZIP/Postal code 77843
Country USA
 
Platform ID GPL4359
Series (1)
GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere

Data table header descriptions
ID_REF
Poplar no PAO1 Stat Pairs Number of perfect match probes for the probeset
Poplar No PAO1 Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF Poplar no PAO1 Stat Pairs Poplar No PAO1 Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
Ptp.5761.1.S1_at 8 8 50167.4 P 0.001953
PtpAffx.692.20.S1_s_at 11 11 45378.3 P 0.000244
PtpAffx.20863.1.A1_at 11 11 45194.2 P 0.000244
Ptp.6246.1.S1_s_at 11 11 44632.2 P 0.000244
PtpAffx.18295.2.A1_s_at 11 11 44506.9 P 0.000244
PtpAffx.4462.1.S1_a_at 11 11 43761.7 P 0.000244
PtpAffx.249.47.A1_s_at 11 11 43354.9 P 0.000244
Ptp.7644.1.S1_s_at 11 11 42559.4 P 0.000244
AFFX-r2-P1-cre-3_at 11 11 42285 P 0.000244
Ptp.7134.1.S1_a_at 11 11 40650.7 P 0.000244
Ptp.2081.1.A1_s_at 11 11 40407.8 P 0.000244
PtpAffx.71061.2.S1_at 11 11 40381.5 P 0.000244
PtpAffx.31476.1.S1_s_at 11 11 40140.4 P 0.000244
PtpAffx.71061.1.S1_at 11 11 39930.4 P 0.000244
PtpAffx.692.21.S1_a_at 11 11 39677.3 P 0.000732
Ptp.8000.1.S1_at 11 11 39540.6 P 0.000244
PtpAffx.61027.1.S1_at 11 11 39424.6 P 0.000244
Ptp.2488.1.S1_at 11 11 38541.8 P 0.000244
PtpAffx.249.7.S1_x_at 11 11 38250.1 P 0.000244
Ptp.172.1.S1_at 8 8 38195.9 P 0.001953

Total number of rows: 61413

Table truncated, full table size 2658 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap