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Sample GSM136561 Query DataSets for GSM136561
Status Public on Jun 05, 2007
Title Microarray analysis of NL and PCOS oocytes (P5)
Sample type RNA
 
Source name MII arrested oocyte
Organism Homo sapiens
Characteristics MII-arrested oocyte collected from a PCOS woman undergoing gonadotropin-releasing hormone (GnRH) analog/ recombinant human (rh) follicle stimulating hormone (FSH) therapy for IVF. A MII oocyte was defined by one polar body in the perivitelline space and no visible nuclear structure in the cytoplasm
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
 
Description Previous microarray analyses have demonstrated that whole ovaries and isolated theca cells from normal and PCOS women have unique gene expression profiles. PCOS follicles have elevated androgen levels before and after GnRH analog/rhFSH therapy for IVF and contain excess amounts of insulin that are positively correlated with adiposity. Taken together, these studies suggest that the altered PCOS hormonal milieu and/or intrinsic abnormalities might alter gene expression in the PCOS oocyte which could impact oocyte developmental competence. To this end, we compared the gene expression profiles of normal and PCOS oocytes using Affymetrix microarray chips.
Data processing MAS5.0
 
Submission date Sep 15, 2006
Last update date Aug 28, 2018
Contact name Jennifer R Wood
E-mail(s) jwood5@unl.edu
Phone 402-472-6437
Fax 402-472-6362
Organization name University of Nebraska
Department Animal Science
Lab Wood
Street address 3800 Fair St.
City Lincoln
State/province NE
ZIP/Postal code 68583-0908
Country USA
 
Platform ID GPL570
Series (1)
GSE5850 Microarray analysis of NL and PCOS oocytes
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE fluorescence intensity normalized to TGT150
ABS_CALL Present, Absent, or Marginal Call
DETECTION P-VALUE statistical analysis of detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1156.7 P 0.000052
AFFX-BioB-M_at 2107.5 P 0.000044
AFFX-BioB-3_at 1576.2 P 0.000081
AFFX-BioC-5_at 3549.6 P 0.000052
AFFX-BioC-3_at 1833.8 P 0.000044
AFFX-BioDn-5_at 3223.3 P 0.000044
AFFX-BioDn-3_at 10768.8 P 0.000044
AFFX-CreX-5_at 31668.7 P 0.000044
AFFX-CreX-3_at 33856.4 P 0.000044
AFFX-DapX-5_at 35.8 A 0.382599
AFFX-DapX-M_at 8.3 A 0.834139
AFFX-DapX-3_at 6.1 A 0.916408
AFFX-LysX-5_at 32.2 A 0.340661
AFFX-LysX-M_at 41.8 A 0.239063
AFFX-LysX-3_at 10 A 0.834139
AFFX-PheX-5_at 38.6 A 0.672935
AFFX-PheX-M_at 16.6 A 0.425962
AFFX-PheX-3_at 17.3 A 0.645547
AFFX-ThrX-5_at 50.9 A 0.205712
AFFX-ThrX-M_at 8.8 A 0.978098

Total number of rows: 54675

Table truncated, full table size 1413 Kbytes.




Supplementary file Size Download File type/resource
GSM136561.CEL.gz 7.7 Mb (ftp)(http) CEL
GSM136561.EXP.gz 366 b (ftp)(http) EXP
Processed data included within Sample table

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