|
| Status |
Public on Feb 23, 2015 |
| Title |
0488C |
| Sample type |
genomic |
| |
|
| Source name |
B-cell acute lymphoblastic leukemia with hyperdiploid chromosomes
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: bone marrow / peripheral blood
subjects: children with B-ALL (California Childhood Cancer Study)
age: 4.4
gender: M
cytogenetics: hyperdiploid
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
AllPrep DNA/RNA Mini Kit (Qiagen) according to manufacturer's instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
Methylation data of B-cell acute lymphoblastic leukemia cells
B-ALL, hyperdiploid
|
| Data processing |
Illumina GenomeStudio software
Non-normalized data file contains unmethylated and methylated signal intensities
Normalized data file contains Average Beta
|
| |
|
| Submission date |
Apr 08, 2014 |
| Last update date |
Feb 23, 2015 |
| Contact name |
Seung-Tae Lee |
| E-mail(s) |
essere.lee@gmail.com
|
| Phone |
+82-10-9933-5465
|
| Organization name |
UCSF
|
| Street address |
1450 3rd Street
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE56600 |
Methylation data of pediatric B-cell acute leukemias |
| GSE56602 |
Two-Track Epigenetic Remodeling and Backtracking to Embryonic Stem Cell Bivalency in B-cell Acute Lymphoblastic Leukemias |
|
