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Sample GSM136514 Query DataSets for GSM136514
Status Public on Jan 07, 2007
Title GM18961
Sample type RNA
 
Source name lymphoblastoid cell lines from the CEU, CHB and JPT samples in the International HapMap Collection.
Organism Homo sapiens
Characteristics lymphoblastoid cell line
Extracted molecule total RNA
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 100 U penicillin/ml, 100 ugm streptomycin sulfate/ml, 1% L-glutamine at 37°C in a humidified 5% CO2 chamber. RNA was extracted using the Qiagen mini-kits
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Sep 15, 2006
Last update date Jan 04, 2007
Contact name Michael Patrick Morley
E-mail(s) mmorley@mail.med.upenn.edu
Phone 215-898-2026
Organization name Perelman School of Medicine at the University of Pennsylvania
Department Penn Cardiovascular Institute
Street address 3400 Civic Center Blvd, Bldg 421
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL201
Series (1)
GSE5859 Allelic Differences Account for Gene Expression Differences Among Population.

Data table header descriptions
ID_REF
VALUE unlogged SUBMITTED_VALUE
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
SUBMITTED_VALUE MAS5-calculated Signal intensity (log2-transformed counts)

Data table
ID_REF VALUE ABS_CALL SUBMITTED_VALUE
1007_s_at 182.3 P 7.51017
1053_at 440.601 P 8.78333
117_at 63.5998 P 5.99095
121_at 622.5 P 9.28193
1255_g_at 8.29999 A 3.05311
1294_at 463.2 P 8.85549
1316_at 62.3 P 5.96116
1320_at 13.9 A 3.79701
1431_at 26.5999 M 4.73335
1438_at 10.6 A 3.40599
1487_at 286.2 P 8.16088
1494_f_at 104.1 A 6.70183
1598_g_at 189.499 A 7.56605
160020_at 109.2 P 6.77083
1729_at 534.902 P 9.06313
1773_at 64.5999 A 6.01346
177_at 145.3 P 7.18289
1861_at 106.1 A 6.72928
200000_s_at 2556.05 P 11.3197
200001_at 2502.75 P 11.2893

Total number of rows: 8793

Table truncated, full table size 236 Kbytes.




Supplementary file Size Download File type/resource
GSM136514.CEL.gz 1.3 Mb (ftp)(http) CEL
GSM136514.EXP.gz 305 b (ftp)(http) EXP
Raw data provided as supplementary file

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