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Sample GSM136507 Query DataSets for GSM136507
Status Public on Jan 07, 2007
Title GM18943
Sample type RNA
 
Source name lymphoblastoid cell lines from the CEU, CHB and JPT samples in the International HapMap Collection.
Organism Homo sapiens
Characteristics lymphoblastoid cell line
Extracted molecule total RNA
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description The cells were grown at a density of 5 x 105 cells/ ml in RPMI 1640 with 15% FBS, 100 U penicillin/ml, 100 ugm streptomycin sulfate/ml, 1% L-glutamine at 37°C in a humidified 5% CO2 chamber. RNA was extracted using the Qiagen mini-kits
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Sep 15, 2006
Last update date Jan 04, 2007
Contact name Michael Patrick Morley
E-mail(s) mmorley@pennmedicine.upenn.edu
Phone 215-898-2026
Organization name Perelman School of Medicine at the University of Pennsylvania
Department Penn Cardiovascular Institute
Street address 3400 Civic Center Blvd, Bldg 421
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL201
Series (1)
GSE5859 Allelic Differences Account for Gene Expression Differences Among Population.

Data table header descriptions
ID_REF
VALUE unlogged SUBMITTED_VALUE
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
SUBMITTED_VALUE MAS5-calculated Signal intensity (log2-transformed counts)

Data table
ID_REF VALUE ABS_CALL SUBMITTED_VALUE
1007_s_at 277.9 P 8.11842
1053_at 476.301 P 8.89573
117_at 99.5997 P 6.63807
121_at 726.501 P 9.50482
1255_g_at 4.49998 A 2.16992
1294_at 490.599 P 8.9384
1316_at 76.8999 P 6.26491
1320_at 18.2 A 4.18587
1431_at 47.6 P 5.57289
1438_at 74.3 A 6.21529
1487_at 383.101 P 8.58158
1494_f_at 132.8 A 7.05311
1598_g_at 285.099 A 8.15532
160020_at 193.7 M 7.59768
1729_at 549.102 P 9.10093
1773_at 160.2 A 7.32373
177_at 103.9 M 6.69905
1861_at 187.101 P 7.54767
200000_s_at 2642.34 P 11.3676
200001_at 3216.11 P 11.6511

Total number of rows: 8793

Table truncated, full table size 236 Kbytes.




Supplementary file Size Download File type/resource
GSM136507.CEL.gz 1.3 Mb (ftp)(http) CEL
GSM136507.EXP.gz 305 b (ftp)(http) EXP

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