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GEO accession:
Sample GSM136417
Query DataSets for GSM136417
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #29
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 29
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: POS, Stage: IIA, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.56031247
1053_at
5.630389226
117_at
6.424410288
121_at
8.430819399
1255_g_at
4.178124458
1294_at
7.73448671
1316_at
6.970142498
1320_at
4.906432432
1405_i_at
7.289534316
1431_at
4.516829384
1438_at
7.20917961
1487_at
7.820016572
1494_f_at
6.923308783
1598_g_at
10.15534464
160020_at
7.954244475
1729_at
8.60584605
1773_at
5.379441857
177_at
5.251149674
179_at
9.137533872
1861_at
5.562340609
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136417.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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