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GEO accession:
Sample GSM136408
Query DataSets for GSM136408
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #21
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 21
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB; Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.01461553
1053_at
5.767708853
117_at
6.521520727
121_at
8.749665024
1255_g_at
4.268622015
1294_at
7.667154096
1316_at
6.448679332
1320_at
5.256510599
1405_i_at
6.431375789
1431_at
4.467277138
1438_at
7.22124615
1487_at
7.633995591
1494_f_at
7.091148927
1598_g_at
9.682588795
160020_at
7.968684853
1729_at
7.497670198
1773_at
5.449871315
177_at
5.247834577
179_at
9.24622175
1861_at
5.806162353
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136408.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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