GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM136400
Query DataSets for GSM136400
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #15
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 15
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: NEG, Stage: IIB, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.15417428
1053_at
6.193081448
117_at
6.694760176
121_at
8.403065845
1255_g_at
4.533697717
1294_at
8.377911492
1316_at
7.050551371
1320_at
5.091414373
1405_i_at
8.129263061
1431_at
4.120854286
1438_at
6.825646507
1487_at
7.772269901
1494_f_at
6.862975375
1598_g_at
10.65062831
160020_at
7.837938045
1729_at
8.392297291
1773_at
5.562607786
177_at
5.446800585
179_at
9.039240682
1861_at
5.593784531
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136400.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
