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GEO accession:
Sample GSM136375
Query DataSets for GSM136375
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #38
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Alive
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: NEG, Stage: IIB, Clinical IBC:Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.10166864
1053_at
5.676249314
117_at
6.378561295
121_at
8.123237011
1255_g_at
4.122838459
1294_at
8.359360746
1316_at
7.571957025
1320_at
4.947599381
1405_i_at
9.133534934
1431_at
4.15288918
1438_at
6.556178947
1487_at
7.42403886
1494_f_at
6.499059829
1598_g_at
10.1020018
160020_at
7.66588889
1729_at
8.561335772
1773_at
5.131210225
177_at
5.351702624
179_at
8.381051231
1861_at
5.408698904
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136375.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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