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GEO accession:
Sample GSM136373
Query DataSets for GSM136373
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #36
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Deceased
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: U, Stage: IIIB, Clinical IBC: Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.84983067
1053_at
5.520101803
117_at
6.147596309
121_at
8.364436282
1255_g_at
4.219711784
1294_at
7.688027998
1316_at
7.029386756
1320_at
5.061861916
1405_i_at
6.619845345
1431_at
4.384940461
1438_at
6.832317671
1487_at
7.800577648
1494_f_at
6.882553648
1598_g_at
10.00300634
160020_at
7.855184249
1729_at
8.362743916
1773_at
5.339252396
177_at
5.203228396
179_at
8.813471765
1861_at
5.381966559
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136373.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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