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GEO accession:
Sample GSM136372
Query DataSets for GSM136372
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #31
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 31
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIA
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.813851058
1053_at
5.128215255
117_at
6.359526777
121_at
8.270237793
1255_g_at
4.019740167
1294_at
8.654488823
1316_at
6.410829444
1320_at
4.456696258
1405_i_at
7.60331354
1431_at
3.974747434
1438_at
6.540756832
1487_at
7.243410719
1494_f_at
6.423690663
1598_g_at
10.38494318
160020_at
7.624774479
1729_at
8.44233638
1773_at
5.136004788
177_at
5.105338975
179_at
8.683202813
1861_at
5.302154847
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136372.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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