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Sample GSM1354610 Query DataSets for GSM1354610
Status Public on Mar 24, 2015
Title total RNA from S4 12 PD
Sample type RNA
 
Source name S4 12 PD
Organism Homo sapiens
Characteristics cell type: Pre-crisis T-cell culture
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent. Quality control was performed with the Agilent Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification kit. Quality control was performed with the Agilent Bioanalyzer.
 
Hybridization protocol Standard Illumina hybridization protocol. Illumina HT-12 V.3 arrays.
Scan protocol Standard Illumina scanning protocol. Scanned in a BeadArray reader.
Description Pre-crisis cell culture sample
Data processing The data were extracted with the HumanHT-12_V3_0_R2_11283641_A manifest and normalised using rank invariant normalization in the GenomeStudio Gene expression module.
 
Submission date Mar 20, 2014
Last update date Mar 24, 2015
Contact name Sofie Degerman
E-mail(s) sofie.degerman@umu.se
Organization name Umeå University
Department Medical Biosciensces
Lab Pathology
Street address NUS, Blg 6M, 2nd floor
City Umeå
State/province Sweden
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL6947
Series (2)
GSE56069 Immortalization of T-cells is accompanied by gradual changes in CpG methylation resulting in a profile resembling a subset of T-cell leukemias [expression]
GSE56070 Immortalization of T-cells is accompanied by gradual changes in CpG methylation resulting in a profile resembling a subset of T-cell leukemias

Data table header descriptions
ID_REF
VALUE AVG_signal
Detection.Pval

Data table
ID_REF VALUE Detection.Pval
ILMN_1762337 159.426 0.5309618
ILMN_2055271 164.4427 0.3689065
ILMN_1736007 159.2406 0.544137
ILMN_2383229 149.9354 0.8208169
ILMN_1806310 156.2489 0.6337286
ILMN_1779670 152.745 0.7615283
ILMN_2321282 172.3374 0.1620553
ILMN_1671474 170.0238 0.1976285
ILMN_1772582 152.2587 0.7720685
ILMN_1735698 177.9141 0.08695652
ILMN_1653355 197.6787 0.01449275
ILMN_1717783 158.5366 0.5612648
ILMN_1705025 173.3009 0.1475626
ILMN_1814316 149.0986 0.8405797
ILMN_2359168 165.7947 0.3267457
ILMN_1731507 165.6361 0.3372859
ILMN_1787689 164.7706 0.3636364
ILMN_1745607 157.6198 0.5942029
ILMN_2136495 156.0616 0.6403162
ILMN_1668111 171.1953 0.1752306

Total number of rows: 48796

Table truncated, full table size 1449 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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