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| Status |
Public on Sep 12, 2006 |
| Title |
HeLa, mock, 24 hr vs. HeLa, 193-MAPK14, pos 12 mut, 24 hr, b |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, mock, 24 hr
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
HeLa
|
| Organism |
Homo sapiens |
| Characteristics |
HeLa, 193-MAPK14, pos 12 mut, 24 hr, b
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
|
| Data processing |
Local background correction
|
| |
|
| Submission date |
Sep 01, 2006 |
| Last update date |
Sep 13, 2006 |
| Contact name |
Aimee Jackson |
| Organization name |
Regulus Therapeutics
|
| Street address |
1896 Rutherford Rd
|
| City |
Carlsbad |
| State/province |
CA |
| ZIP/Postal code |
92008 |
| Country |
USA |
| |
|
| Platform ID |
GPL3992 |
| Series (1) |
| GSE5814 |
Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity |
|
| Data table header descriptions |
| ID_REF |
Rosetta generated unique probe identifier |
| VALUE |
Corrected (normalized) Log10 Ratio of channels (CH2/CH1) |
| LOGINTENSITY |
Corrected average log intensity of channels |
| INTENSITY1 |
Raw Cy3 intensity (CH1) |
| INTENSITY2 |
Raw Cy5 intensity (CH2) |
| PVALUE |
P-value of LogRatio |
| QUALITY |
1 - if good and non control, 0 - otherwise |
| Data table |
| ID_REF |
VALUE |
LOGINTENSITY |
INTENSITY1 |
INTENSITY2 |
PVALUE |
QUALITY |
| 10023804644 |
-0.0396 |
-2.0237 |
0.0145 |
0.0129 |
9.1372e-001 |
1 |
| 10023804645 |
0.1663 |
0.0855 |
1.0054 |
1.4744 |
4.7610e-004 |
1 |
| 10023804646 |
-0.3570 |
-0.5851 |
0.3926 |
0.1724 |
5.0433e-008 |
1 |
| 10023804647 |
0.0043 |
-1.4298 |
0.0381 |
0.0385 |
9.6914e-001 |
1 |
| 10023804648 |
-0.3195 |
-0.7620 |
0.2500 |
0.1198 |
4.1947e-010 |
1 |
| 10023804649 |
0.0097 |
-1.4305 |
0.0380 |
0.0388 |
9.2202e-001 |
1 |
| 10023804650 |
0.0772 |
-1.5930 |
0.0241 |
0.0288 |
4.8464e-001 |
1 |
| 10023804651 |
0.1921 |
-0.0462 |
0.7206 |
1.1224 |
6.7591e-004 |
1 |
| 10023804652 |
-0.0014 |
-0.9832 |
0.1045 |
0.1042 |
9.8428e-001 |
1 |
| 10023804653 |
0.0205 |
-1.3105 |
0.0486 |
0.0509 |
8.0574e-001 |
1 |
| 10023804654 |
-0.0476 |
-1.8101 |
0.0187 |
0.0168 |
8.0638e-001 |
1 |
| 10023804655 |
0.1827 |
0.0051 |
0.8205 |
1.2492 |
1.6809e-004 |
1 |
| 10023804656 |
0.0283 |
0.6611 |
4.4384 |
4.7348 |
5.6185e-001 |
1 |
| 10023804657 |
-0.0474 |
-0.1692 |
0.7154 |
0.6415 |
3.6177e-001 |
1 |
| 10023804658 |
-0.0386 |
-1.7391 |
0.0220 |
0.0201 |
8.2547e-001 |
1 |
| 10023804659 |
-0.2514 |
0.4081 |
3.4210 |
1.9154 |
1.1772e-005 |
1 |
| 10023804660 |
0.1358 |
-1.0055 |
0.0858 |
0.1173 |
1.7925e-002 |
1 |
| 10023804661 |
0.2144 |
-0.7056 |
0.1548 |
0.2531 |
3.0268e-004 |
1 |
| 10023804662 |
0.3380 |
1.1116 |
8.7618 |
19.1429 |
5.8660e-006 |
1 |
| 10023804663 |
0.0377 |
-0.9938 |
0.0978 |
0.1068 |
5.2934e-001 |
1 |
Total number of rows: 23566
Table truncated, full table size 1272 Kbytes.
| Supplementary data files not provided |
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