NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM134485 Query DataSets for GSM134485
Status Public on Sep 12, 2006
Title HeLa, mock, 24 hr vs. HeLa, 193-MAPK14, pos 3 mut, 24 hr, a
Sample type RNA
 
Channel 1
Source name HeLa
Organism Homo sapiens
Characteristics HeLa, mock, 24 hr
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name HeLa
Organism Homo sapiens
Characteristics HeLa, 193-MAPK14, pos 3 mut, 24 hr, a
Extracted molecule total RNA
Label Cy5
 
 
Description For details please see: Jackson AL, Burchard J, Schelter J, Chau BN, Cleary M, Lim L, and Linsley PS. RNA (2006) 12(7):1179-1187
Data processing Local background correction
 
Submission date Sep 01, 2006
Last update date Sep 13, 2006
Contact name Aimee Jackson
Organization name Regulus Therapeutics
Street address 1896 Rutherford Rd
City Carlsbad
State/province CA
ZIP/Postal code 92008
Country USA
 
Platform ID GPL3992
Series (1)
GSE5814 Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity

Data table header descriptions
ID_REF Rosetta generated unique probe identifier
VALUE Corrected (normalized) Log10 Ratio of channels (CH2/CH1)
LOGINTENSITY Corrected average log intensity of channels
INTENSITY1 Raw Cy3 intensity (CH1)
INTENSITY2 Raw Cy5 intensity (CH2)
PVALUE P-value of LogRatio
QUALITY 1 - if good and non control, 0 - otherwise

Data table
ID_REF VALUE LOGINTENSITY INTENSITY1 INTENSITY2 PVALUE QUALITY
10023804644 0.0315 -2.3328 0.0059 0.0093 9.4968e-001 1
10023804645 0.0009 0.0835 1.2268 1.2141 9.9015e-001 1
10023804646 -0.1250 -0.5922 0.2988 0.2216 1.8903e-001 1
10023804647 -0.0185 -1.2956 0.0519 0.0499 7.4733e-001 1
10023804648 -0.0405 -0.7670 0.1793 0.1643 5.8705e-001 1
10023804649 -0.0581 -1.3844 0.0458 0.0394 4.6972e-001 1
10023804650 0.1747 -1.9314 0.0102 0.0149 3.8626e-001 1
10023804651 0.0107 -0.1981 0.6255 0.6777 9.3099e-001 1
10023804652 -0.2238 -1.0596 0.1129 0.0674 3.2622e-005 1
10023804653 -0.0022 -1.3102 0.0503 0.0506 9.7438e-001 1
10023804654 -0.0904 -1.8269 0.0170 0.0137 4.5176e-001 1
10023804655 -0.0078 -0.1421 0.7276 0.7265 9.2397e-001 1
10023804656 -0.0181 0.6985 5.1218 4.9614 8.5659e-001 1
10023804657 -0.0336 -0.2856 0.5396 0.5127 7.2355e-001 1
10023804658 -0.0428 -1.8494 0.0148 0.0139 7.7261e-001 1
10023804659 -0.0648 0.3746 2.6179 2.1944 5.4242e-001 1
10023804660 -0.0209 -0.9368 0.1187 0.1153 8.3617e-001 1
10023804661 0.2518 -0.7784 0.1243 0.2244 2.4914e-003 1
10023804662 0.2433 1.0967 9.4247 16.6510 3.5565e-004 1
10023804663 -0.0049 -0.9249 0.1210 0.1192 9.2361e-001 1

Total number of rows: 23566

Table truncated, full table size 1273 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap