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Sample GSM133964 Query DataSets for GSM133964
Status Public on Jan 08, 2007
Title Fukuda_1-9_8A_Rep1_ATH1
Sample type RNA
 
Source name na
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Col-0 suspension cells
Treatment protocol For in vitro tracheary element (xylem vessel element) transdifferentiation, a 7.5 ml aliquot of 7-day-old subcultured cells was transferred into 42.5 ml of fresh medium that included 1 uM brassinolide and 10 mM H3BO3. Cells were collected by centrigugation after 8 days of culture.
Extracted molecule total RNA
Label biotin
 
Description harvesting: collection after treatment - 8 days
growth media type: liquid culture media
nutrients: MS1 MS salts, 1 ug /ml 2,4-dichlorphenoxyacetic acid and 3% sucrose
nutrients: MS2 MS salts, 3% sucrose, 1 uM brassinolide and 10 mM H3BO3
average daily temperature: 22C
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Sep 01, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.39267016601563E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 2.65531030273438E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 4.46407073974609E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 5.26580322265625E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.30776687622070E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.72108459472656E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 8.33103942871094E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 5.32809753417969E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 4.41003303527832E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 8.32340419292450E-001 A 8.28612983226776E-001
AFFX-r2-Bs-thr-5_s_at 5.07238674163818E+000 A 1.49657994508743E-001
AFFX-r2-Bs-thr-3_s_at 4.84873008728027E+000 A 5.67627012729645E-001
AFFX-r2-Bs-phe-M_at 2.66657042503357E+000 A 4.32372987270355E-001
AFFX-r2-Bs-phe-5_at 6.08104646205902E-001 A 6.96289002895355E-001
AFFX-r2-Bs-phe-3_at 2.95860791206360E+000 A 5.00000000000000E-001
AFFX-r2-Bs-lys-M_at 3.78275132179260E+000 A 1.71387001872063E-001
AFFX-r2-Bs-lys-5_at 2.30704021453857E+000 A 3.34473013877869E-001
AFFX-r2-Bs-lys-3_at 4.84297704696655E+000 A 2.19482004642487E-001
AFFX-r2-Bs-dap-M_at 1.51347145438194E-001 A 7.53906011581421E-001
AFFX-r2-Bs-dap-5_at 2.27442479133606E+000 A 4.32372987270355E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133964.CEL.gz 2.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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