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Sample GSM133030 Query DataSets for GSM133030
Status Public on Jan 08, 2007
Title BC482-2
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N6673
Developmental stage: 4-week old rosette-stage plants
Tissue: leaves
Treatment protocol Conidiospores of Botrytis cinerea were collected with sterile water from 2-week-old plates, pelletted and resuspended in 24 g L-1 sterile potato dextrose broth (Difco, Detroit, USA). Conidiospores were diluted to 5X10^5 spores/ml and pre-germinated at RT for 3 hours. Four 5 ul droplets were placed on each of 4-5 fully expanded rosette leaves per plant. Plants were watered right before the experiment, leaving 500 ml of watered on the bottom of the flat, then inoculated, covered with a clear plastic lid. Leaves were harvested 48 hpi.
Extracted molecule total RNA
Label biotin
 
Description na
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 31, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.16615478515625E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 3.31981420898438E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 6.34235534667969E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 9.04230590820312E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.30623870849609E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 2.17317886352539E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 9.37878952026367E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 7.49340362548828E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 8.14216156005859E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 4.98480081558228E+000 A 5.00000000000000E-001
AFFX-r2-Bs-thr-5_s_at 6.41547870635986E+000 A 3.66210997104645E-001
AFFX-r2-Bs-thr-3_s_at 8.01486253738403E-001 A 9.53857004642487E-001
AFFX-r2-Bs-phe-M_at 3.79201978445053E-001 A 9.81445014476776E-001
AFFX-r2-Bs-phe-5_at 2.83699417114258E+000 A 6.01073980331421E-001
AFFX-r2-Bs-phe-3_at 1.12391414642334E+001 A 5.33936023712158E-001
AFFX-r2-Bs-lys-M_at 8.06788635253906E+000 A 2.46094003319740E-001
AFFX-r2-Bs-lys-5_at 1.35036826133728E+000 A 6.65526986122131E-001
AFFX-r2-Bs-lys-3_at 5.37694692611694E+000 A 1.11571997404099E-001
AFFX-r2-Bs-dap-M_at 3.53747653961182E+000 A 4.32372987270355E-001
AFFX-r2-Bs-dap-5_at 6.37845098972321E-001 A 9.62401986122131E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM133030.CEL.gz 2.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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