|
| Status |
Public on Jun 03, 2015 |
| Title |
NB3 |
| Sample type |
genomic |
| |
|
| Source name |
Neuroblastoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue type: Neuroblastoma
tissue group: tumoral tissue
tumor stage (inss classification): Stage 4s
mycn status: non-amplified
age at diagnosis (months): <18m
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was isolated from snap-frozen samples using Wizard DNA Purification Kit from Promega following manufacturers’ protocols.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol.
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylation450K BeadChip using standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
|
| Description |
HSJD12_3
|
| Data processing |
GenomeStudio (Illumina) and R Package (Du P et al. Bioinformatics 2008) version 3.0.1; available through Bioconductor (www.bioconductor.org). The non_normalized_*.txt contains unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Feb 06, 2014 |
| Last update date |
Jun 03, 2015 |
| Contact name |
Cinzia Lavarino |
| E-mail(s) |
clavarino@fsjd.org
|
| Phone |
+34932804000
|
| Organization name |
Hospital Sant Joan de Déu
|
| Department |
Oncology
|
| Lab |
Oncology
|
| Street address |
Santa Rosa 39-57
|
| City |
Esplugues de Llobregat |
| State/province |
Barcelona |
| ZIP/Postal code |
08950 |
| Country |
Spain |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE54719 |
DNA methylation changes at CpG and non-CpG sites are associated with development and clinical behavior in neuroblastoma [methylation] |
| GSE54721 |
DNA methylation changes at CpG and non-CpG sites are associated with development and clinical behavior in neuroblastoma. |
|
