GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM131299 Query DataSets for GSM131299
Status Public on Jan 08, 2007
Title AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1
Sample type RNA
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Shoots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
Osmotic stress (300 mM Mannitol), Group Kudla. Mannitol was added to a concentration of 300 mM in the Media. To add Mannitol the raft was lifted out A magnetic stir bar and a stirrer were used to mix the media and the added Mannitol. After the rafts were put back in the boxes, they were transferred back to the climate chamber.
Extracted molecule total RNA
Label biotin
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
Platform ID GPL198
Series (1)
GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
AFFX-r2-P1-cre-5_at 2.32495996093750E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 3.05417456054688E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 3.13067718505859E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 6.03007263183594E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.33256546020508E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.87152191162109E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 9.85224304199219E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 9.23458404541016E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 6.67923889160156E+001 P 7.32421991415322E-004
AFFX-r2-Bs-thr-M_s_at 2.91084194183350E+000 A 7.53906011581421E-001
AFFX-r2-Bs-thr-5_s_at 1.14599096775055E+000 A 7.25830018520355E-001
AFFX-r2-Bs-thr-3_s_at 2.48952364921570E+000 A 6.33789002895355E-001
AFFX-r2-Bs-phe-M_at 3.44739705324173E-001 A 9.53857004642487E-001
AFFX-r2-Bs-phe-5_at 2.54497861862183E+000 A 6.33789002895355E-001
AFFX-r2-Bs-phe-3_at 1.15757942199707E+000 A 7.25830018520355E-001
AFFX-r2-Bs-lys-M_at 5.44508028030396E+000 A 2.74170011281967E-001
AFFX-r2-Bs-lys-5_at 2.28885412216187E-001 A 9.32372987270355E-001
AFFX-r2-Bs-lys-3_at 1.13474130630493E+000 A 4.66064006090164E-001
AFFX-r2-Bs-dap-M_at 3.38441163301468E-001 A 6.65526986122131E-001
AFFX-r2-Bs-dap-5_at 9.54982995986938E-001 A 8.50341975688934E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.

Supplementary file Size Download File type/resource
GSM131299.CEL.gz 2.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap