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Sample GSM131160 Query DataSets for GSM131160
Status Public on Jan 08, 2007
Title AtGen_C-10_1-Pi-6_REP1_ATH1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Developmental stage: 3.70
Tissue: leaves
Treatment protocol Plants were moved to growth chamber with 20°C day / 18°C night for treatment. As many Phytophthora infestans drops (10 000 spores/drop) on leaves as possible. Trays covered with lid after treatment. Leaves harvested 6 hours post-treatment.
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Humidity: 70%
Temperature: 23°C day / 20°C night
Lighting: 8 hrs light / 16 hrs dark
Medium: GS90 : vermiculite (1:1)
Water: when necessary
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5616 AtGenExpress: Response to Phytophthora infestans
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 3.20190000000000E+003 P 2.44000000000000E-004
AFFX-r2-P1-cre-3_at 3.43740000000000E+003 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-5_at 3.73700000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioD-3_at 6.20200000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioC-5_at 2.04400000000000E+002 P 7.32000000000000E-004
AFFX-r2-Ec-bioC-3_at 2.61100000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioB-M_at 1.06400000000000E+002 P 1.95300000000000E-003
AFFX-r2-Ec-bioB-5_at 1.33200000000000E+002 P 2.44000000000000E-004
AFFX-r2-Ec-bioB-3_at 4.86000000000000E+001 P 1.07420000000000E-002
AFFX-r2-Bs-thr-M_s_at 2.95000000000000E+001 A 6.01074000000000E-001
AFFX-r2-Bs-thr-5_s_at 2.59000000000000E+001 A 1.94580000000000E-001
AFFX-r2-Bs-thr-3_s_at 6.80000000000000E+000 A 6.96289000000000E-001
AFFX-r2-Bs-phe-M_at 3.10000000000000E+000 A 8.28613000000000E-001
AFFX-r2-Bs-phe-5_at 6.60000000000000E+000 A 7.80518000000000E-001
AFFX-r2-Bs-phe-3_at 6.80000000000000E+000 A 6.65527000000000E-001
AFFX-r2-Bs-lys-M_at 3.10000000000000E+000 A 6.33789000000000E-001
AFFX-r2-Bs-lys-5_at 7.80000000000000E+000 A 2.74170000000000E-001
AFFX-r2-Bs-lys-3_at 1.39000000000000E+001 A 1.71387000000000E-001
AFFX-r2-Bs-dap-M_at 6.10000000000000E+000 A 6.01074000000000E-001
AFFX-r2-Bs-dap-5_at 6.30000000000000E+000 A 7.80518000000000E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131160.CEL.gz 2.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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