GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1297337
Query DataSets for GSM1297337
Status
Public on Feb 14, 2014
Title
SouthItalian3
Sample type
genomic
Source name
blood
Organism
Homo sapiens
Characteristics
gender: male
nationality: SouthItalian
Extracted molecule
genomic DNA
Extraction protocol
Extraction of genomic DNA from saliva and blood using common laboratory protocols.
Label
biotin
Label protocol
Followed Illumina Standard Protocol
Hybridization protocol
Followed Illumina Standard Protocol
Scan protocol
Followed Illumina Standard Protocol
Data processing
Image was analyzed using Illumina GenomeStudio v2009.2.0.29803
Submission date
Dec 23, 2013
Last update date
Feb 14, 2014
Contact name
George Busby
E-mail(s)
george@well.ox.ac.uk
Organization name
Wellcome Trust Centre for Human Genetics
Street address
Roosevelt Drive
City
Oxford
State/province
OXON
ZIP/Postal code
OX3 7BN
Country
United Kingdom
Platform ID
GPL8888
Series (1)
GSE53626
A genetic atlas of human admixture history
Data table header descriptions
ID_REF
VALUE
Genotype: AA,AB,BB,or NC (no call)
Score
Theta
R
B Allele Freq
Log R Ratio
Data table
ID_REF
VALUE
Score
Theta
R
B Allele Freq
Log R Ratio
200003
AB
0.9299
0.434
1.204
0.4980
-0.1103
200006
AB
0.7877
0.437
2.446
0.4766
0.1721
200047
AA
0.8612
0.057
0.551
0.0117
0.0802
200050
BB
0.8331
0.999
1.571
1.0000
0.3802
200052
BB
0.9466
0.997
1.030
1.0000
0.1537
200053
AA
0.7494
0.083
1.193
0.0015
0.1104
200070
AB
0.9705
0.559
0.303
0.5607
-0.7711
200078
BB
0.6531
0.938
2.151
0.9969
0.1937
200087
AB
0.9078
0.596
1.179
0.5550
-0.1187
200091
AB
0.8205
0.465
1.905
0.4493
-0.1234
200096
BB
0.9354
0.964
0.804
1.0000
-0.2544
200124
BB
0.8902
0.981
0.915
1.0000
0.0050
200199
BB
0.9599
1.000
0.517
1.0000
-0.4319
200240
AA
0.8783
0.018
1.332
0.0000
-0.0068
200251
AB
0.9410
0.505
1.165
0.4687
-0.1209
200258
AB
0.7452
0.416
1.741
0.4685
-0.1833
200260
AB
0.7948
0.774
0.920
0.5453
-0.3885
200261
BB
0.8794
0.979
1.255
1.0000
0.0711
200262
AA
0.9257
0.024
0.631
0.0118
-0.0393
200519
AA
0.8717
0.023
1.999
0.0164
0.2370
Total number of rows:
657366
Table truncated, full table size
30122 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
