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Sample GSM1290704 Query DataSets for GSM1290704
Status Public on Mar 14, 2014
Title Adoptive transfer of OT-I derived T cells transduced with shRNA into B16 tumor bearing mice_5-tu1
Sample type RNA
 
Source name CD8 T cells isolated from tumor
Organism Mus musculus
Characteristics cell type: CD8 T cells
transduction: shRNA targeting Arhgap5
tissue: tumor
sample name: 5-tu1
Extracted molecule total RNA
Extraction protocol Trizol, per manufacturers protocol
Label Biotin
Label protocol One cycle amplification by standard Affymetrix procedure
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description CD8 T cells isolated from tumor; transduced with shRNA targeting: Arhgap5; Sample name: 5-tu1
Adoptive transfer of OT-I derived T cells transduced with shRNA into B16 tumor bearing mice.
Data processing JMP Genomics
Background correction: RMA; Transformation: log2; Normalization: median scaling; Summary method: median
 
Submission date Dec 17, 2013
Last update date Mar 14, 2014
Contact name John R Walker
E-mail(s) jwalker@gnf.org
Phone 858-812-1636
Organization name Genomics Institute of the Novartis Research Foundation
Lab Genetics Core
Street address 10675 John Jay Hopkins
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL1261
Series (1)
GSE53388 Immunotherapy Targets in Tumors

Data table header descriptions
ID_REF
VALUE log2 signal

Data table
ID_REF VALUE
1415670_at 4.27441406
1415671_at 4.06347656
1415672_at 4.01074219
1415673_at 3.34863281
1415674_a_at 3.45605469
1415675_at 4.12988281
1415676_a_at 5.14160156
1415677_at 2.70410156
1415678_at 6.14160156
1415679_at 5.12988281
1415680_at 3.74316406
1415681_at 4.05371094
1415682_at 2.75488281
1415683_at 4.20214844
1415684_at 1.57226563
1415685_at 2.94824219
1415686_at 4.51855469
1415687_a_at 5.23339844
1415688_at 4.22753906
1415689_s_at 2.69042969

Total number of rows: 45101

Table truncated, full table size 984 Kbytes.




Supplementary file Size Download File type/resource
GSM1290704_NUID-0000-0160-0964.cel.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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