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Sample GSM128661 Query DataSets for GSM128661
Status Public on Aug 15, 2006
Title Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1
Sample type RNA
 
Source name Col-5
Organism Arabidopsis thaliana
Characteristics Stock Code: N1644
Tissue: Leaves
Treatment protocol Plants were inoculated by vacuum infiltration with a suspension of Pseudomonas syringae pv. tomato DC3118 Coronatine- bacteria at a concentration of 5x10e7 cfu/ml. Inoculated leaf tissue from at least 15 plants was collected for RNA isolation.
Extracted molecule total RNA
Label biotin
 
Description stratification: Stratified 3 days at 4degC
growth protocol: Arabidopsis thaliana accession Col-0 plants were grown in soil in growth chambers with a day/night cycle of 12 h/12 h, a light intensity of 100 µE, and a constant temperature of 20°C. Four- to 5-week-old plants were used for experiments.
Location: Growth chamber
Growth substrate: Commercial soil
Watering: flats were watered every 2-3 days
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 15, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.69424707031250E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 2.92825097656250E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 3.56611114501953E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 5.70653625488281E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.81261459350586E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.93252883911133E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 9.86065902709961E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 7.94405441284180E+001 P 7.32421991415322E-004
AFFX-r2-Ec-bioB-3_at 7.45156021118164E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 1.22039928436279E+001 A 1.29638999700546E-001
AFFX-r2-Bs-thr-5_s_at 4.83326625823975E+000 A 1.94580003619194E-001
AFFX-r2-Bs-thr-3_s_at 1.00660407543182E+000 A 7.53906011581421E-001
AFFX-r2-Bs-phe-M_at 2.88821339607239E+000 A 6.01073980331421E-001
AFFX-r2-Bs-phe-5_at 2.45652303099632E-001 A 9.53857004642487E-001
AFFX-r2-Bs-phe-3_at 9.91215109825134E-001 A 6.96289002895355E-001
AFFX-r2-Bs-lys-M_at 3.94315600395203E-001 A 6.33789002895355E-001
AFFX-r2-Bs-lys-5_at 4.38736772537231E+000 A 2.19482004642487E-001
AFFX-r2-Bs-lys-3_at 4.15304851531982E+000 A 2.46094003319740E-001
AFFX-r2-Bs-dap-M_at 2.94880771636963E+000 A 5.00000000000000E-001
AFFX-r2-Bs-dap-5_at 4.55987274646759E-001 A 8.28612983226776E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM128661.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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