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Sample GSM1277843 Query DataSets for GSM1277843
Status Public on Jun 04, 2015
Title CEXO-33
Sample type RNA
 
Source name Healthy female exocervix
Organism Homo sapiens
Characteristics clinic: Control
Treatment protocol None
Growth protocol None
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label Biotin
Label protocol Biotinylated ssDNA were prepared according to the standard Affymetrix protocol from 300 ng total RNA (Expression Analysis Technical Manual, Affymetrix).
 
Hybridization protocol Following fragmentation, ssDNA were hybridized for 16 hr at 45C and 60 rpm on Human Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 protocol FS450_0007
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix) with GeneChip Scanner 3000
Description re-analysis of GSM732044
Data processing Microarrays were normalized using the RMA algorithm (Robust Multichip Average) in the Affymetrix Expression Console. The analysis was done at Gene Level Default: RMA-Sketch
 
Submission date Dec 02, 2013
Last update date Jun 04, 2015
Contact name INGRID MEDINA MARTINEZ
E-mail(s) fiemed@hotmail.com
Organization name HOSPITAL GENERAL DE MEXICO OD
Department MEDICINA GENOMICA
Lab MEDICINA GENOMICA
Street address DR. BALMIS 148
City MEXICO CITY
State/province CUAUHTEMOC
ZIP/Postal code 06726
Country Mexico
 
Platform ID GPL6244
Series (2)
GSE52903 Gene Dosage, Mainly 3q Amplification, Deregulates a Quarter of Genes in Cervical Cancer: It Induces Glycolysis, Anaphase-dependent Proteasome Proteolysis, and Low Survival
GSE52904 Impact of Gene Dosage on Gene Expression, Biological Processes and Survival in Cervical Cancer: a Genome-Wide Follow-Up Study
Relations
Reanalysis of GSM732044

Data table header descriptions
ID_REF
VALUE RMA default expression value derived from Affymetrix Expression Console software

Data table
ID_REF VALUE
7892501 5.710871
7892502 5.306966
7892503 3.873716
7892504 9.02632
7892505 2.727386
7892506 4.058874
7892507 4.844645
7892508 6.573969
7892509 10.75205
7892510 5.189003
7892511 3.486135
7892512 7.565551
7892513 3.868771
7892514 10.66671
7892515 8.369242
7892516 5.064485
7892517 6.606611
7892518 2.863665
7892519 5.196984
7892520 9.796547

Total number of rows: 33297

Table truncated, full table size 549 Kbytes.




Supplementary file Size Download File type/resource
GSM1277843_CEXO-33.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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