|
| Status |
Public on May 26, 2007 |
| Title |
C115 |
| Sample type |
RNA |
| |
|
| Source name |
breast cancer tumor tissue
|
| Organism |
Homo sapiens |
| Characteristics |
ER: neg
HER2: pos
B-R grade: III
node status: neg
LVI: pos
tumor type: Ductal
tumor size: 2.5
|
| Treatment protocol |
The frozen bulk tumor samples were confirmed to contain at least 70% viable tumor by area on histologic thin sections.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA extracted from frozen tissue was used to generate biotinylated cRNA target.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol.
|
| Scan protocol |
standard Affymetrix protocol.
|
| Description |
Gene expression data from breast cancer tumor tissue.
|
| Data processing |
Raw gene expression values were obtained using Affymetrix GeneChip software and further analyzed using the DNA-Chip Analyzer (dChip).
|
| |
|
| Submission date |
Aug 04, 2006 |
| Last update date |
Jan 14, 2015 |
| Contact name |
James Dirk Iglehart |
| E-mail(s) |
JIGLEHART@PARTNERS.ORG
|
| Organization name |
Dana Farber Cancer Institute
|
| Department |
Cancer Biology
|
| Lab |
Iglehart lab
|
| Street address |
44 Binney St.
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE5460 |
Predicting Features of Breast Cancer with Gene Expression Patterns |
|
| Relations |
| Reanalyzed by |
GSE64985 |
