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Status |
Public on Dec 12, 2013 |
Title |
Reference Epigenome: ChIP-Seq Input from Human Psoas Muscle Tissue; renlab.Input.STL001PO.02.01 |
Sample type |
SRA |
|
|
Source name |
Psoas Muscle tissue; renlab.Input.STL001PO.02.01
|
Organism |
Homo sapiens |
Characteristics |
sra sample accession: SRS366511 disease: None biomaterial_provider: Shin Lin, Stanford University biomaterial_type: Primary Tissue tissue_type: Psoas Muscle tissue_depot: N/A collection_method: Autopsy donor_id: STL001 donor_age: 3 donor_health_status: healthy, no prior medical history (NO diabetes, hypertension, coronary artery disease, cancer) donor_sex: Male donor_ethnicity: Caucasian and African American experiment_type: ChIP-Seq Input extraction_protocol: See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf extraction_protocol_type_of_sonicator: Biorupter extraction_protocol_sonication_cycles: 80 chip_protocol: Input chip_protocol_chromatin_amount: 500 micrograms
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Library construction protocol: See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
RANDOM |
Instrument model |
Illumina HiSeq 2000 |
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|
Description |
sample_term_id: UBERON_0008450 assay_term_id: OBI_0000716 nucleic_acid_term_id: SO_0000352 Design description: ChIP-Seq Input from Human Psoas Muscle Tissue. Sequencing was done on the Illumina HiSeq 2000 platform. Library name: CY339 EDACC Genboree Experiment Page: http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUCSD%2FEXPERIMENT%2FEDACC.18803 EDACC Genboree Sample Page: http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUCSD%2FSAMPLE%2FEDACC.14034 **************** For data usage terms and conditions, please refer to: http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies ****************
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Data processing |
Various levels of processed data files will be made available as this project proceeds.
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Submission date |
Sep 09, 2013 |
Last update date |
May 15, 2019 |
Contact name |
UCSD AND SALK |
Organization name |
University of California, San Diego
|
Street address |
Health Sciences Drive
|
City |
La Jolla |
State/province |
CA |
ZIP/Postal code |
92092 |
Country |
USA |
|
|
Platform ID |
GPL11154 |
Series (1) |
GSE16256 |
UCSD Human Reference Epigenome Mapping Project |
|
Relations |
SRA |
SRX347285 |
BioSample |
SAMN01737663 |