|
| Status |
Public on Sep 05, 2013 |
| Title |
DH line, CFD02-103 |
| Sample type |
genomic |
| |
|
| Source name |
leaf
|
| Organism |
Zea mays |
| Characteristics |
status: DH line
maize population: Dent
|
| Treatment protocol |
none
|
| Growth protocol |
Plants grown in greenhouse or field.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from dried leaves using a modified CTAB protocol (modified from Saghai-Maroof et al. 1984, PNAS)
|
| Label |
Cy3, Cy5
|
| Label protocol |
Array hybridization and raw data processing was performed according to manufacturer’s instructions (Illumina).
|
| |
|
| Hybridization protocol |
Array hybridization and raw data processing was performed according to manufacturer’s instructions (Illumina).
|
| Scan protocol |
Array hybridization and raw data processing was performed according to manufacturer’s instructions (Illumina).
|
| Description |
Genomic DNA from maize was analyzed with the Illumina MaizeSNP50 BeadChip
|
| Data processing |
Data processing was performed using GenomeStudio software 2011.1 (Illumina)(Genotyping Module v 1.9.4) using the clusterfile maizesnp50_b.egt available from Illumina.
|
| |
|
| Submission date |
Sep 03, 2013 |
| Last update date |
Sep 05, 2013 |
| Contact name |
Eva Bauer |
| E-mail(s) |
e.bauer@tum.de
|
| Phone |
++49 8161 715243
|
| Organization name |
Technical University of Munich
|
| Department |
Plant Breeding
|
| Street address |
Liesel-Beckmann-Str. 2
|
| City |
Freising |
| ZIP/Postal code |
85354 |
| Country |
Germany |
| |
|
| Platform ID |
GPL17677 |
| Series (1) |
| GSE50558 |
Intraspecific variation of recombination rate in maize |
|
