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Sample GSM1220573 Query DataSets for GSM1220573
Status Public on Sep 18, 2013
Title ChIP-Seq Input of Fetal Spinal Cord; Histone.DS23069
Sample type SRA
 
Source name Fetal Spinal, Cord primary tissue, day 108; Histone.DS23069
Organism Homo sapiens
Characteristics sample alias: fSpinal_Cord.H-24832d108
sample common name: Fetal Spinal Cord
disease: None
biomaterial_provider: University of Washington, Congenital Defects Lab. Ian Glass
biomaterial_type: Primary Tissue
tissue_type: Fetal Spinal Cord
tissue_depot: UW
collection_method: fetal
donor_id: H-24832
donor_age: day 108
donor_health_status: NA
donor_sex: Female
donor_ethnicity: NA
experiment_type: ChIP-Seq Input
extraction_protocol: http://www.roadmapepigenomics.org/protocols/type/experimental
extraction_protocol_type_of_sonicator: Diagenode Bioruptor
extraction_protocol_sonication_cycles: 20-40 cycles of 0.5 minute on and 0.5 minute off
chip_protocol: Input
chip_protocol_chromatin_amount: 50ng
Extracted molecule genomic DNA
Extraction protocol Library construction protocol: Single read - Illumina
 
Library strategy ChIP-Seq
Library source genomic
Library selection RANDOM
Instrument model Illumina HiSeq 2000
 
Description sample_term_id: UBERON_0002240
assay_term_id: OBI_0000716
nucleic_acid_term_id: SO_0000352
Design description: ChIP-Seq Input
Library name: Histone.DS23069
EDACC Genboree Experiment Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FEXPERIMENT%2FEDACC.18600
EDACC Genboree Sample Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FUniversity%20of%20Washington%2FSAMPLE%2FEDACC.18575
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For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
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Data processing Various levels of processed data files will be made available as this project proceeds.
 
Submission date Aug 30, 2013
Last update date May 15, 2019
Contact name Northwest REMC
E-mail(s) rharris1@bcm.tmc.edu
Organization name University of Washington
Street address -
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Platform ID GPL11154
Series (1)
GSE18927 University of Washington Human Reference Epigenome Mapping Project
Relations
SRA SRX342321
BioSample SAMN02340050

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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