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Sample GSM119749 Query DataSets for GSM119749
Status Public on Aug 04, 2006
Title HeLa, mock, 24 hr vs. HeLa, SOD1 SNP at position 13
Sample type RNA
 
Channel 1
Source name HeLa cells
Organism Homo sapiens
Characteristics Cells transfected with siRNA to SOD1, SNP at position 13
Extracted molecule total RNA
Label Cy3/Cy5 (fluor-reversed pair)
 
Channel 2
Source name HeLa cells
Organism Homo sapiens
Characteristics Cells mock-transfected
Extracted molecule total RNA
Label Cy5/Cy3 (fluor-reversed pair)
 
 
Description For details please see: Dianne S. Schwarz, Hongliu Ding, Lori Kennington,
Jessica T. Moore, Janell Schelter, Julja Burchard, Peter S. Linsley,
Neil Aronin, Zuoshang Xu and Phillip D. Zamore (2006) PLoS Genetics.
Data processing custom
 
Submission date Jul 11, 2006
Last update date Aug 03, 2006
Contact name Julja Burchard
Organization name Merck & Co., Inc.
Department Computational & Systems Biology
Street address 33 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02176
Country USA
 
Platform ID GPL3992
Series (1)
GSE5291 Designing siRNA that distinguish between genes that differ by a single nucleotide

Data table header descriptions
ID_REF
VALUE MLRATIO: Averaged log10 ratio [log10(CHANNEL1/CHANNEL2), error weighted]
LOGINTENSITY Average log intensity of channels
PVALUE Significance of MLRATIO (VALUE)
MLRATIOERROR Error estimate for MLRATIO (VALUE)

Data table
ID_REF VALUE LOGINTENSITY PVALUE MLRATIOERROR
10023804644 0.12814 -1.77347 4.620694e-001 1.742288e-001
10023804645 -0.01681 0.06217 7.123760e-001 4.559671e-002
10023804646 0.08610 -0.44018 8.076070e-002 4.930580e-002
10023804647 0.07554 -1.53546 3.802787e-001 8.609296e-002
10023804648 0.09383 -0.61978 4.537560e-002 4.688761e-002
10023804649 -0.02558 -1.55556 8.058491e-001 1.040883e-001
10023804650 0.02057 -1.74634 8.585261e-001 1.154158e-001
10023804651 -0.05842 -0.09350 2.422664e-001 4.995967e-002
10023804652 -0.24002 -1.08064 4.473822e-006 5.231395e-002
10023804653 0.01280 -1.72450 9.343086e-001 1.553401e-001
10023804654 -0.00345 -2.11295 9.909865e-001 3.057425e-001
10023804655 0.03760 -0.07340 5.495583e-001 6.283158e-002
10023804656 -0.07496 0.58011 1.124123e-001 4.721986e-002
10023804657 0.01349 -0.17227 8.016454e-001 5.369646e-002
10023804658 0.08345 -2.07435 6.781589e-001 2.010852e-001
10023804659 0.03683 0.50442 5.186943e-001 5.707139e-002
10023804660 0.00475 -1.42934 9.614866e-001 9.842446e-002
10023804661 0.01094 -0.93269 8.649278e-001 6.433577e-002
10023804662 -0.06742 0.96263 1.736182e-001 4.954753e-002
10023804663 0.01880 -1.31842 8.321600e-001 8.870450e-002

Total number of rows: 23403

Table truncated, full table size 1310 Kbytes.




Supplementary file Size Download File type/resource
GSM119749.251145449274.txt.gz 615.7 Kb (ftp)(http) TXT
GSM119749.251145449640.txt.gz 615.1 Kb (ftp)(http) TXT

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