|
| Status |
Public on Feb 06, 2014 |
| Title |
E06_113_TAB_2 |
| Sample type |
genomic |
| |
|
| Source name |
Homo sapiens, Brain
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Brain
methylation type: 5-hmc
|
| Treatment protocol |
None
|
| Growth protocol |
None
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Standard DNA extraction protocol
|
| Label |
Cy3, Cy5
|
| Label protocol |
Contained within the Illumina Infinium HumanMethylation450 BeadChips protocol
|
| |
|
| Hybridization protocol |
Contained within the Illumina Infinium HumanMethylation450 BeadChips protocol
|
| Scan protocol |
Using an Illumina HiScan
|
| Description |
Sample name: E06_113_TAB_2
|
| Data processing |
raw signal intensities were quantile normalized separately and imputed values calculated for missing values. The beta value was calculated as: (signal b)/(signal a + signal b + 100)
Unmethylated and methylated signal intensities (see supplementary file linked to Series record)
|
| |
|
| Submission date |
Jul 24, 2013 |
| Last update date |
Feb 06, 2014 |
| Contact name |
Pankaj Chopra |
| E-mail(s) |
pchopr4@emory.edu
|
| Phone |
404 727 0405
|
| Organization name |
Emory University
|
| Department |
Human Genetics
|
| Lab |
Warren Lab
|
| Street address |
615 Michael St. NE, Ste. 375
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30322 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE49177 |
Array-based assay detects genome-wide 5-methylcytosine and 5-hydroxymethlycytosine in non-human primates and mice |
|
