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GEO accession:
Sample GSM117107
Query DataSets for GSM117107
Status
Public on Sep 30, 2006
Title
NA18975_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 2
Biomaterial provider
Coriell NA18975
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18975
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
22.863
0.000000
0.000000
SNP_A-1780618
BB
0.015625
14.622
0.014667
0.022535
SNP_A-1780632
AB
0.125000
4.378
0.681818
0.605159
SNP_A-1780654
AA
0.007813
18.300
1.000000
0.979118
SNP_A-4192495
AA
0.015625
11.361
0.910112
1.000000
SNP_A-4192498
AA
0.396484
0.000
1.000000
0.806216
SNP_A-1780732
BB
0.015625
13.726
0.000000
0.001016
SNP_A-1780848
AB
0.007813
13.816
0.547053
0.550413
SNP_A-1780985
BB
0.007813
11.806
0.000000
0.000000
SNP_A-1781022
BB
0.265625
0.072
0.000000
0.414508
SNP_A-1781076
BB
0.039063
19.105
0.067130
0.000000
SNP_A-1781249
AA
0.007813
7.356
0.822898
0.879218
SNP_A-1781276
AB
0.062500
11.528
0.466071
0.527592
SNP_A-1781302
AB
0.039063
10.037
0.662844
0.540816
SNP_A-1781510
AA
0.007813
20.082
0.954545
1.000000
SNP_A-4192564
BB
0.132813
4.407
0.120497
0.117391
SNP_A-1781614
AB
0.007813
12.845
0.586580
0.566288
SNP_A-1781633
AA
0.007813
16.678
1.000000
1.000000
SNP_A-1781764
AB
0.007813
12.700
0.509818
0.525585
SNP_A-1781829
AA
0.007813
10.338
1.000000
0.874129
Total number of rows:
262264
Table truncated, full table size
12932 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117107.CEL.gz
41.5 Mb
(ftp)
(http)
CEL
GSM117107.raw.txt.gz
24.8 Mb
(ftp)
(http)
TXT
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