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GEO accession:
Sample GSM117104
Query DataSets for GSM117104
Status
Public on Sep 30, 2006
Title
NA18972_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA18972
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18972
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
12.271
0.059794
0.000000
SNP_A-1780618
AB
0.187500
1.678
0.251901
0.367329
SNP_A-1780632
AB
0.039063
7.163
0.643243
0.605556
SNP_A-1780654
AA
0.007813
15.429
0.971044
0.912917
SNP_A-4192495
AB
0.062500
7.475
0.397233
0.417012
SNP_A-4192498
AB
0.210938
1.606
0.212098
0.474533
SNP_A-1780732
AB
0.125000
2.055
0.447695
0.648266
SNP_A-1780848
BB
0.093750
6.319
0.000000
0.210884
SNP_A-1780985
AB
0.046875
5.395
0.441083
0.474444
SNP_A-1781022
BB
0.500000
0.000
0.150415
0.404762
SNP_A-1781076
BB
0.093750
8.236
0.179688
0.060811
SNP_A-1781249
AA
0.007813
10.266
0.985280
0.867513
SNP_A-1781276
AA
0.023438
11.623
1.000000
0.827647
SNP_A-1781302
AA
0.039063
12.154
1.000000
0.941579
SNP_A-1781510
AA
0.023438
23.641
0.980808
1.000000
SNP_A-4192564
BB
0.062500
11.488
0.000000
0.331942
SNP_A-1781614
AA
0.007813
17.430
0.982721
0.833835
SNP_A-1781633
AB
0.007813
11.530
0.418246
0.538622
SNP_A-1781764
AB
0.007813
13.449
0.469384
0.544776
SNP_A-1781829
AA
0.007813
9.896
0.961783
0.853684
Total number of rows:
262264
Table truncated, full table size
12943 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117104.CEL.gz
42.3 Mb
(ftp)
(http)
CEL
GSM117104.raw.txt.gz
25.4 Mb
(ftp)
(http)
TXT
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