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GEO accession:
Sample GSM117086
Query DataSets for GSM117086
Status
Public on Sep 30, 2006
Title
NA18952_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 2
Biomaterial provider
Coriell NA18952
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18952
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
21.657
0.000000
0.018931
SNP_A-1780618
BB
0.007813
23.228
0.010417
0.000000
SNP_A-1780632
AB
0.187500
4.668
0.744048
0.478873
SNP_A-1780654
AA
0.007813
16.258
0.996596
0.922667
SNP_A-4192495
BB
0.007813
10.683
0.000000
0.000000
SNP_A-4192498
AB
0.432617
-0.502
0.142045
0.396072
SNP_A-1780732
AB
0.015625
6.255
0.516381
0.553494
SNP_A-1780848
AA
0.007813
16.649
0.874380
1.000000
SNP_A-1780985
BB
0.007813
11.365
0.000000
0.000000
SNP_A-1781022
AA
0.007813
11.921
1.000000
0.867816
SNP_A-1781076
AB
0.023438
8.253
0.569853
0.591102
SNP_A-1781249
AA
0.023438
9.285
1.000000
0.823636
SNP_A-1781276
AA
0.062500
11.594
0.937378
0.875810
SNP_A-1781302
AA
0.023438
8.553
0.857372
0.930851
SNP_A-1781510
AA
0.023438
15.179
0.930657
0.982387
SNP_A-4192564
BB
0.015625
6.830
0.080913
0.000000
SNP_A-1781614
AB
0.007813
12.254
0.604015
0.578431
SNP_A-1781633
AB
0.039063
11.091
0.469194
0.313953
SNP_A-1781764
AB
0.007813
15.374
0.523865
0.477012
SNP_A-1781829
AA
0.062500
3.852
0.921120
0.776786
Total number of rows:
262264
Table truncated, full table size
12945 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117086.CEL.gz
40.1 Mb
(ftp)
(http)
CEL
GSM117086.raw.txt.gz
23.6 Mb
(ftp)
(http)
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